PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_09501A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family LBD
Protein Properties Length: 454aa    MW: 47790.4 Da    PI: 4.326
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_09501AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26050.18.3e-16175241166
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamss.lvyeAe 66 
                                +CaaC + +r+C+++C++apyfp ++p k++ v+k F+a++v +ll++l+e ++ +a+   lv  A+
  Oropetium_20150105_09501A 175 RCAACSFCQRTCTPECIYAPYFPRDDPGKYKTVQKAFSAHHVGRLLRKLREPDKCAAFVDlLVNTAN 241
                                6************************************************887766665540444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089112.479174276IPR004883Lateral organ boundaries, LOB
PfamPF031958.1E-14175242IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MDGRKGKTPV LKQEAGGAES ASTTHPTPSG SSEPDGVLAP DFAPNGDPER EGSAAMEDDE  60
LVAWLEEEMA ASADESSSGV MAPQEVESAQ PVTGAQEPAS DGSGVMAPQE VESAQPVTGA  120
QEPASDGYAH AAPVASVLQQ YMAAGGVPGP SLPEATDDQG KGPATTKSSK ERRPRCAACS  180
FCQRTCTPEC IYAPYFPRDD PGKYKTVQKA FSAHHVGRLL RKLREPDKCA AFVDLLVNTA  240
NANPSRQRVQ KLHEIERMLP AEWIRQAMPE ASSSRGAAGT MQAGGSVAAE RLNQHQQQLQ  300
NAEVARQAMP EASSSRGAAG TMQIACRGTE LTTAASLARQ QDIERQFEML QQPDWSKNLD  360
YTTPEFASTQ TTPPQQDMAG GQQGAGDVNA STMPGSGSGA PSMPLLVEQP PQSSGTQGEA  420
SQPPVQNDGG EQDESFDDLL AYFTAPYPEK KDD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.43e-13LBD family protein